Refactor CodeQL CI (#3319)

- Move CodeQL scripts to the scripts directory
- Only report error in CI if it's a CodeQL reported issue and was not dismissed
  before and is likely to be an actual error

.github/workflows/codeql.yml

@@ -64,7 +64,7 @@ jobs:
     #   modify them (or add more) to build your code if your project, please refer to the EXAMPLE below for guidance.
 
     - run: |
-        ./.github/workflows/codeql_buildscript.sh
+        ./.github/scripts/codeql_buildscript.sh
     - name: Perform CodeQL Analysis
       uses: github/codeql-action/analyze@v3
       with:
@@ -110,5 +110,8 @@ jobs:
 
     - name: Fail if an error is found
       run: |
-        ./.github/workflows/codeql_fail_on_error.py \
+        ./.github/scripts/codeql_fail_on_error.py \
           ${{ steps.step1.outputs.sarif-output }}/cpp.sarif
+      env:
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        GITHUB_REPOSITORY: ${{ github.repository }}