diff --git a/scripts/Modules/Filters.pm b/scripts/Modules/Filters.pm
new file mode 100644
index 0000000..56e072c
--- /dev/null
+++ b/scripts/Modules/Filters.pm
@@ -0,0 +1,71 @@
+package Modules::Filters;
+
+use strict;
+use warnings;
+use diagnostics;
+
+use FindBin;
+use lib $FindBin::Bin;
+use Util;
+
+my %CONFIGS = (
+    no_aot => {
+        label   => "Exclude WAMR AOT array",
+        regions => [ [ '_wamr_aot_start', '_wamr_aot_end' ] ],
+    },
+    no_mmap => {
+        label   => "Exclude WAMR mmap",
+        regions => [ [ '_wamr_mmap_start', '_wamr_mmap_end' ] ],
+    },
+    no_runtime_pool => {
+        label   => "Exclude WAMR runtime pool",
+        regions => [ [ '_wamr_runtime_pool_start', '_wamr_runtime_pool_end' ] ],
+    },
+    no_linear_pool => {
+        label   => "Exclude WAMR linear pool",
+        regions => [ [ '_wamr_linear_pool_start', '_wamr_linear_pool_end' ] ],
+    },
+    no_global_heap => {
+        label   => "Exclude WAMR global heap",
+        regions => [ [ '_wamr_global_heap_start', '_wamr_global_heap_end' ] ],
+    },
+);
+
+# Those will be executed automatically by runner.pl (+ no filter at all)
+my @DEFAULT_CONFIGS = ('no_aot');
+
+sub get_configs {
+    return \%CONFIGS;
+}
+
+sub get_default_configs {
+    return @DEFAULT_CONFIGS;
+}
+
+sub build_filter_clause {
+    my ( $experiment_dir, $config_name ) = @_;
+
+    return "" unless defined $config_name && length($config_name) > 0;
+
+    my $regions = $CONFIGS{$config_name}{regions};
+    return "" unless defined $regions;
+
+    return ""
+      unless defined $experiment_dir && -f "$experiment_dir/system.elf";
+
+    my @filters;
+    for my $pair (@$regions) {
+        my ( $start_sym, $end_sym ) = @$pair;
+        my $start =
+          Util::elf_sym_addr( "$experiment_dir/system.elf", $start_sym );
+        my $end = Util::elf_sym_addr( "$experiment_dir/system.elf", $end_sym );
+        next unless defined $start && defined $end && $end > $start;
+        push @filters,
+          "p.injection_instr_absolute NOT BETWEEN $start AND @{[$end - 1]}";
+    }
+
+    return "" unless @filters;
+    return "\nAND " . join( "\nAND ", @filters );
+}
+
+1;
diff --git a/scripts/Modules/Util.pm b/scripts/Modules/Util.pm
index 500246e..9a93d48 100644
--- a/scripts/Modules/Util.pm
+++ b/scripts/Modules/Util.pm
@@ -126,7 +126,9 @@ sub find_subdirs {
 }
 
 sub execute_query {
-    my ( $experiment, $queryname, $db_conf, $builds_dir, $do_notify_file ) = @_;
+    my ( $experiment, $queryname, $db_conf, $builds_dir, $do_notify_file,
+        $filter_config_name )
+      = @_;
 
     my $module = "Queries::$queryname";
     my $file   = "$module.pm";
@@ -140,9 +142,10 @@ sub execute_query {
     my $postprocess = $module->can('postprocess')
       or die "$module can't postprocess()";
 
-    my $querystring    = $query->($experiment, "$builds_dir/$experiment");
+    my $querystring =
+      $query->( $experiment, "$builds_dir/$experiment", $filter_config_name );
     my $argsstring     = $args->();
-    my $filenamestring = $filename->();
+    my $filenamestring = $filename->($filter_config_name);
 
     # TODO: Pass the values instead of rewriting db.conf.
     #       Can also use DBI's database handle directly.
diff --git a/scripts/Queries/Faults.pm b/scripts/Queries/Faults.pm
index b95ba65..9b3ceb8 100644
--- a/scripts/Queries/Faults.pm
+++ b/scripts/Queries/Faults.pm
@@ -4,10 +4,19 @@ use strict;
 use warnings;
 use diagnostics;
 
+use FindBin;
+use lib "$FindBin::Bin/..";
+use lib "$FindBin::Bin/../Modules";
+use Modules::Filters;
+
 use feature 'say';
 
 sub query {
-    my ($experiment) = @_;
+    my ( $experiment, $experiment_dir, $filter_config_name ) = @_;
+    $filter_config_name //= '';
+
+    my $filters = Modules::Filters::build_filter_clause( $experiment_dir,
+        $filter_config_name );
 
     my $querystring = "SELECT
 benchmark, resulttype, SUM(t.time2 - t.time1 + 1) AS faults,
@@ -17,7 +26,7 @@ JOIN trace t ON v.id = t.variant_id
 JOIN fspgroup g ON g.variant_id = t.variant_id AND g.instr2 = t.instr2 AND g.data_physical_address = t.data_physical_address
 JOIN result_GenericExperimentMessage r ON r.pilot_id = g.pilot_id
 JOIN fsppilot p ON r.pilot_id = p.id
-WHERE v.variant = '$experiment'
+WHERE v.variant = '$experiment'$filters
 GROUP BY benchmark, resulttype, p.injection_instr_absolute
 ORDER BY benchmark, resulttype, SUM(t.time2 - t.time1 + 1) DESC;";
 
@@ -28,7 +37,12 @@ ORDER BY benchmark, resulttype, SUM(t.time2 - t.time1 + 1) DESC;";
 
 sub args { return "--batch --raw"; }
 
-sub filename { return "faults.csv"; }
+sub filename {
+    my ($filter_config_name) = @_;
+    $filter_config_name //= '';
+    my $suffix = length($filter_config_name) ? "_$filter_config_name" : "";
+    return "faults${suffix}.csv";
+}
 
 sub postprocess { $_[0] =~ s/\t/,/g; }
 
diff --git a/scripts/Queries/FaultsFiltered.pm b/scripts/Queries/FaultsFiltered.pm
deleted file mode 100644
index e9c75b0..0000000
--- a/scripts/Queries/FaultsFiltered.pm
+++ /dev/null
@@ -1,64 +0,0 @@
-package Queries::FaultsFiltered;
-
-use strict;
-use warnings;
-use diagnostics;
-
-use FindBin;
-use lib "$FindBin::Bin/../Modules";
-use Util;
-
-use feature 'say';
-
-# Those regions from linker.ld will be excluded
-my @EXCLUDE_REGIONS = (
-    [ '_wamr_aot_start',          '_wamr_aot_end' ],
-    # [ '_wamr_mmap_start',         '_wamr_mmap_end' ],
-    # [ '_wamr_global_heap_start',  '_wamr_global_heap_end' ],
-    # [ '_wamr_runtime_pool_start', '_wamr_runtime_pool_end' ],
-    # [ '_wamr_linear_pool_start',  '_wamr_linear_pool_end' ],
-);
-
-sub query {
-    my ( $experiment, $experiment_dir ) = @_;
-
-    my @filters;
-    if ( defined $experiment_dir && -f "$experiment_dir/system.elf" ) {
-        for my $pair (@EXCLUDE_REGIONS) {
-            my ( $start_sym, $end_sym ) = @$pair;
-            my $start =
-              Util::elf_sym_addr( "$experiment_dir/system.elf", $start_sym );
-            my $end =
-              Util::elf_sym_addr( "$experiment_dir/system.elf", $end_sym );
-            next unless defined $start && defined $end && $end > $start;
-            push @filters,
-              "p.injection_instr_absolute NOT BETWEEN $start AND @{[$end - 1]}";
-        }
-    }
-
-    my $extra = @filters ? "\nAND " . join( "\nAND ", @filters ) : "";
-
-    my $querystring = "SELECT
-benchmark, resulttype, SUM(t.time2 - t.time1 + 1) AS faults,
-CONCAT('0x', HEX(p.injection_instr_absolute)) AS fault_address
-FROM variant v
-JOIN trace t ON v.id = t.variant_id
-JOIN fspgroup g ON g.variant_id = t.variant_id AND g.instr2 = t.instr2 AND g.data_physical_address = t.data_physical_address
-JOIN result_GenericExperimentMessage r ON r.pilot_id = g.pilot_id
-JOIN fsppilot p ON r.pilot_id = p.id
-WHERE v.variant = '$experiment'$extra
-GROUP BY benchmark, resulttype, p.injection_instr_absolute
-ORDER BY benchmark, resulttype, SUM(t.time2 - t.time1 + 1) DESC;";
-
-    say $querystring;
-
-    return $querystring;
-}
-
-sub args { return "--batch --raw"; }
-
-sub filename { return "faults_filtered.csv"; }
-
-sub postprocess { $_[0] =~ s/\t/,/g; }
-
-1;
diff --git a/scripts/Queries/Results.pm b/scripts/Queries/Results.pm
index 2b2be3c..af9822c 100644
--- a/scripts/Queries/Results.pm
+++ b/scripts/Queries/Results.pm
@@ -4,10 +4,19 @@ use strict;
 use warnings;
 use diagnostics;
 
+use FindBin;
+use lib "$FindBin::Bin/..";
+use lib "$FindBin::Bin/../Modules";
+use Modules::Filters;
+
 use feature 'say';
 
 sub query {
-    my ($experiment) = @_;
+    my ( $experiment, $experiment_dir, $filter_config_name ) = @_;
+    $filter_config_name //= '';
+
+    my $extra = Modules::Filters::build_filter_clause( $experiment_dir,
+        $filter_config_name );
 
     my $querystring = "SELECT
 benchmark, resulttype, sum(t.time2 - t.time1 + 1) AS faults
@@ -16,7 +25,7 @@ JOIN trace t ON v.id = t.variant_id
 JOIN fspgroup g ON g.variant_id = t.variant_id AND g.instr2 = t.instr2 AND g.data_physical_address = t.data_physical_address
 JOIN result_GenericExperimentMessage r ON r.pilot_id = g.pilot_id
 JOIN fsppilot p ON r.pilot_id = p.id
-WHERE v.variant = '$experiment'
+WHERE v.variant = '$experiment'$extra
 GROUP BY v.id, resulttype
 ORDER BY variant, benchmark, resulttype;";
 
@@ -27,7 +36,12 @@ ORDER BY variant, benchmark, resulttype;";
 
 sub args { return "-t"; }
 
-sub filename { return "results.txt"; }
+sub filename {
+    my ($filter_config_name) = @_;
+    $filter_config_name //= '';
+    my $suffix = length($filter_config_name) ? "_filtered_$filter_config_name" : "";
+    return "results${suffix}.txt";
+}
 
 sub postprocess { }
 
diff --git a/scripts/Queries/ResultsData.pm b/scripts/Queries/ResultsData.pm
index 496efed..a634d68 100644
--- a/scripts/Queries/ResultsData.pm
+++ b/scripts/Queries/ResultsData.pm
@@ -4,10 +4,19 @@ use strict;
 use warnings;
 use diagnostics;
 
+use FindBin;
+use lib "$FindBin::Bin/..";
+use lib "$FindBin::Bin/../Modules";
+use Modules::Filters;
+
 use feature 'say';
 
 sub query {
-    my ($experiment) = @_;
+    my ( $experiment, $experiment_dir, $filter_config_name ) = @_;
+    $filter_config_name //= '';
+
+    my $extra = Modules::Filters::build_filter_clause( $experiment_dir,
+        $filter_config_name );
 
     my $querystring = "SELECT
 benchmark, resulttype, sum(t.time2 - t.time1 + 1) AS faults
@@ -16,7 +25,7 @@ JOIN trace t ON v.id = t.variant_id
 JOIN fspgroup g ON g.variant_id = t.variant_id AND g.instr2 = t.instr2 AND g.data_physical_address = t.data_physical_address
 JOIN result_GenericExperimentMessage r ON r.pilot_id = g.pilot_id
 JOIN fsppilot p ON r.pilot_id = p.id
-WHERE v.variant = '$experiment'
+WHERE v.variant = '$experiment'$extra
 GROUP BY v.id, resulttype
 ORDER BY variant, benchmark, resulttype;";
 
@@ -27,7 +36,12 @@ ORDER BY variant, benchmark, resulttype;";
 
 sub args { return "--batch --raw"; }
 
-sub filename { return "resultsdata.csv"; }
+sub filename {
+    my ($filter_config_name) = @_;
+    $filter_config_name //= '';
+    my $suffix = length($filter_config_name) ? "_filtered_$filter_config_name" : "";
+    return "resultsdata${suffix}.csv";
+}
 
 sub postprocess { $_[0] =~ s/\t/,/g; }
 
diff --git a/scripts/menu.pl b/scripts/menu.pl
index 81c39fe..afd08e9 100644
--- a/scripts/menu.pl
+++ b/scripts/menu.pl
@@ -11,6 +11,7 @@ use lib "$FindBin::Bin/Modules";
 use Util;
 use Mars;
 use TUI;
+use Modules::Filters;
 use Text::CSV_XS;
 
 use feature 'say';
@@ -85,15 +86,43 @@ my %handlers = (
           TUI::select_from_list( "Select Queries to Run", 1, @queries );
         die "No query selected" unless @selected_queries;
 
+        # Select filter configs
+        my @filter_choices = ("None");
+        my %filter_label_name;
+        my @filter_configs;
+        my $configs = Modules::Filters::get_configs();
+        foreach my $name ( sort keys %$configs ) {
+            my $label = $configs->{$name}{label};
+            push @filter_choices, $label;
+            $filter_label_name{$label} = $name;
+        }
+        my @selected_filter_labels =
+          TUI::select_from_list( "Select Filters to Apply", 1,
+            @filter_choices );
+        die "No filter selected" unless @selected_filter_labels;
+        @filter_configs = ();
+        foreach my $label (@selected_filter_labels) {
+            if ( $label eq "None" ) {
+                push @filter_configs, '';
+            }
+            else {
+                push @filter_configs, $filter_label_name{$label};
+            }
+        }
+
         # Run queries on databases
         foreach my $db (@selected_dbs) {
             foreach my $query (@selected_queries) {
-                Util::rewrite_file( $local_db_conf, "database=",
-                    "database=$db\n" );
+                foreach my $config (@filter_configs) {
+                    Util::rewrite_file( $local_db_conf, "database=",
+                        "database=$db\n" );
 
-                say "Running $query on $db...";
-                Util::execute_query( $db =~ s/smchurla_//r,
-                    $query, $local_db_conf, $local_archive_dir, 0 );
+                    my $config_label = length($config) ? " ($config)" : "";
+                    say "Running $query$config_label on $db...";
+                    Util::execute_query( $db =~ s/smchurla_//r,
+                        $query, $local_db_conf, $local_archive_dir, 0,
+                        $config );
+                }
             }
         }
     },
diff --git a/scripts/runner.pl b/scripts/runner.pl
index 75ad65b..20bede9 100644
--- a/scripts/runner.pl
+++ b/scripts/runner.pl
@@ -6,10 +6,10 @@ use diagnostics;
 
 use FindBin;
 use lib $FindBin::Bin;
-use lib "$FindBin::Bin/../../scripts";
-use lib "$FindBin::Bin/../../scripts/Modules";
+use lib "$FindBin::Bin/Modules";
 
-use Util;
+use Modules::Filters;
+use Modules::Util;
 
 use feature 'say';
 
@@ -209,9 +209,10 @@ sub inject {
 
     # Read catch flags written by build.pl into the experiment directory
     my $runner_flags_file = "$remote_builds_dir/$experiment/runner_flags";
-    my @catch_flags = ();
+    my @catch_flags       = ();
     if ( -e $runner_flags_file ) {
-        open( my $rfh, '<', $runner_flags_file ) or die "Cannot open $runner_flags_file: $!";
+        open( my $rfh, '<', $runner_flags_file )
+          or die "Cannot open $runner_flags_file: $!";
         @catch_flags = map { chomp; "-Wf,$_" } grep { /\S/ } <$rfh>;
         close($rfh);
     }
@@ -272,16 +273,15 @@ sub inject {
 sub results {
     my ($experiment) = @_;
 
-    my @queries = Util::find_files("$remote_root/scripts/Queries");
+    my @queries =
+      map { s/\.pm//gr } Util::find_files("$remote_root/scripts/Queries");
+    my @configs = ( '', Modules::Filters::get_default_configs() );
 
-    foreach (@queries) {
-        my $query = $_;
-        $query =~ s/\.pm//g;
-
-        # Util::notify("Running query $query for $experiment...");
-
-        Util::execute_query( $experiment, $query,
-            $remote_db_conf, $remote_builds_dir, 1 );
+    for my $query (@queries) {
+        for my $config (@configs) {
+            Util::execute_query( $experiment, $query,
+                $remote_db_conf, $remote_builds_dir, 1, $config );
+        }
     }
 }